PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001385.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 355aa MW: 40461.4 Da PI: 5.9067

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001385.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.2	1.2e-22	107	189	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+++++eleH Rmu_sc0001385.1_g000003.1 107 FYNCYAKQQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMVKFRLMESNRWRIIEVELEH 184 9*************99997.66779**********99888.....***************************** PP FAR1 86 nHela 90 nH ++ Rmu_sc0001385.1_g000003.1 185 NHLIS 189 876 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MPKPQGRQWY ECMTIRSTKT ETPFTLELLV RPAPTLHSCC SPEISHQMDE VSLNTEPAGE 60 DDADGYEIEG DCAMTEFVSQ NGIMQGENPL PPSAGMEFDS YEDVYYFYNC YAKQQGFGVR 120 VSNTWYRKSK ERYRGKLSCS SAGFKKKSEA NRPRPETRTG CPAMVKFRLM ESNRWRIIEV 180 ELEHNHLISP ASGKFYKSHK SIGGGTKRSL QLDSAEEVQK IRLFRTVIID SEGNRSIDVD 240 EGESGNKVDY SNQLKLKEGD AKAVQNFFSR LQLMDPDFFY VVDLNEKGCL RNLFWADARS 300 RVAYTYFSDV VAIDTTCLEN KFEVPLVSFS GVNHHGQSVI CLDIYHTDYF QSSKT

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MPKPQGRQWY ECMTIRSTKT ETPFTLELLV RPAPTLHSCC SPEISHQMDE VSLNTEPAGE  60
DDADGYEIEG DCAMTEFVSQ NGIMQGENPL PPSAGMEFDS YEDVYYFYNC YAKQQGFGVR  120
VSNTWYRKSK ERYRGKLSCS SAGFKKKSEA NRPRPETRTG CPAMVKFRLM ESNRWRIIEV  180
ELEHNHLISP ASGKFYKSHK SIGGGTKRSL QLDSAEEVQK IRLFRTVIID SEGNRSIDVD  240
EGESGNKVDY SNQLKLKEGD AKAVQNFFSR LQLMDPDFFY VVDLNEKGCL RNLFWADARS  300
RVAYTYFSDV VAIDTTCLEN KFEVPLVSFS GVNHHGQSVI CLDIYHTDYF QSSKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	9e-78	FAR1 family protein