PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0001377.1_g000005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 224aa MW: 24560.8 Da PI: 9.4726 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.1 | 6.9e-11 | 19 | 69 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 + kGV+++k + +Wv+eIr+ ++ r +l +f a+ Aa a++ a +l+++ Rmu_sc0001377.1_g000005.1 19 KLKGVCQRK-WDKWVSEIRVlG----MQDRLWLSSFSNAKAAAVACDVAYYCLRKH 69 679*****9.**********44....45*************************986 PP | |||||||
2 | AP2 | 50 | 7.3e-16 | 103 | 152 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + kGVr++k +g+Wv+eIr+p gk+ r +lg+f tae Aa a++ a +l++ Rmu_sc0001377.1_g000005.1 103 KLKGVRQRK-WGKWVSEIRVP---GKQDRLWLGSFSTAEAAAVARDVAYYCLRK 152 679*****9.**********8...556************************997 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence |
MSYSSEDNSS LMTARNGRKL KGVCQRKWDK WVSEIRVLGM QDRLWLSSFS NAKAAAVACD 60 VAYYCLRKHW TLESLNFPTI LPCSVNQAAN SSSPTTAAGN GRKLKGVRQR KWGKWVSEIR 120 VPGKQDRLWL GSFSTAEAAA VARDVAYYCL RKPSTLEGLN FPTVLPCSLI NAYSNCSSSP 180 QNWRQANGSE PRGMQSGGCW DNVGESSSAT TGGVALSISI EDYL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22810.1 | 3e-28 | ERF family protein |