PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001371.1_g000021.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 356aa MW: 40921.5 Da PI: 4.6933

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001371.1_g000021.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	44.4	5.2e-14	22	153	6	128
NAM 6 rFhPtdeelvveyLkkkvegkk.leleevikevdiykv...ePwdLpk.....kvka.eekewyfFskrdkkyatgkrknr..a 77 FhPt+++lv yL +++++ + + +++++e++iy + Pwd+ + k +++ +yfFs+ +k g+r r Rmu_sc0001371.1_g000021.1 22 TFHPTNSDLVGSYLYNRIKSPTpIGGKQTFPEIKIYGTtglPPWDIWRiyepcK--FpHQDYIYFFSPVKKL---GSRCCRriG 100 5****************9987555556777777655333863233322..2355677999998775...556655234 PP NAM 78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrap.kgektdWvmheyrl 128 + g+W++t + k+v+++ +e g + + + ++r++ +++ W+m+e+++ Rmu_sc0001371.1_g000021.1 101 SDGGTWSETESAKPVYVSgIEEPYGKLRKFRYENNRDKgCEHHAAWLMDEFTI 153 569**********854566888899999866544145689*****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MASSSISFLM RLEDLDVGVV KTFHPTNSDL VGSYLYNRIK SPTPIGGKQT FPEIKIYGTT 60 GLPPWDIWRI YEPCKFPHQD YIYFFSPVKK LGSRCCRRIG SDGGTWSETE SAKPVYVSGI 120 EEPYGKLRKF RYENNRDKGC EHHAAWLMDE FTINQAPDLA LCRLKVNDKG GGRKKRKKSS 180 DETNEDENHR KTMSFKNRKL EPKRVLQVQN NMCEQQKGSA SFSTTSTTQQ LPPQCDDHGY 240 CMDENLLFSP TGLVDDYDDI LNSDQFMASL DQWYEEQQQF SDSSLLVPQQ EVEPNNSCVE 300 QQQQQDEQQL CGGFDLMVHG YQDLDIAFDT PYLQSEEFNG FDQDQPKALY QYSDVL

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MASSSISFLM RLEDLDVGVV KTFHPTNSDL VGSYLYNRIK SPTPIGGKQT FPEIKIYGTT  60
GLPPWDIWRI YEPCKFPHQD YIYFFSPVKK LGSRCCRRIG SDGGTWSETE SAKPVYVSGI  120
EEPYGKLRKF RYENNRDKGC EHHAAWLMDE FTINQAPDLA LCRLKVNDKG GGRKKRKKSS  180
DETNEDENHR KTMSFKNRKL EPKRVLQVQN NMCEQQKGSA SFSTTSTTQQ LPPQCDDHGY  240
CMDENLLFSP TGLVDDYDDI LNSDQFMASL DQWYEEQQQF SDSSLLVPQQ EVEPNNSCVE  300
QQQQQDEQQL CGGFDLMVHG YQDLDIAFDT PYLQSEEFNG FDQDQPKALY QYSDVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	178	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	5e-06	NAC family protein