PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001144.1_g000005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 185aa MW: 20612.4 Da PI: 9.0198 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 102.5 | 1.5e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ss Rmu_sc0001144.1_g000005.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 46.1 | 2.1e-16 | 62 | 117 | 37 | 92 |
K-box 37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 hllGedL++Ls+keLq+Le+qLe +l++ R++K++ l + +l+ k ++ e+ k Rmu_sc0001144.1_g000005.1 62 HLLGEDLGPLSVKELQNLEKQLEGALTQARQRKERQLGDLNLQLRDKLQKEGENLK 117 9************************************9999999998887766655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFSSA 60 GHLLGEDLGP LSVKELQNLE KQLEGALTQA RQRKERQLGD LNLQLRDKLQ KEGENLKAIQ 120 DFWSSNSAAA GNSNFLHSSQ ASHIDPAPEP ILQIGYHHYV AAESADVPKS MALAAETNFI 180 QGWVL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 1e-67 | MIKC_MADS family protein |