PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001010.1_g000092.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 680aa MW: 74688.5 Da PI: 9.252

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001010.1_g000092.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.4	6.9e-08	582	631	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Rmu_sc0001010.1_g000092.1 582 RRPFSVAEVEALVQAVEKLGTGRWRDVKMRAFenaKHRTYVDLKDKWKTL 631 6789999*****************9766667************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence
MVLQKRLDYG FNGFQVPVTP RAPRSARRRS TISKRIEDSS MGAFDLLATV AGKLLLEGES 60 SPASSHTSTG KEKCSIINDS CPNGDKPLKV EPCDQGSCDR KFFVSDNISQ GHNQSCSSKE 120 SPVHQNESHS VMTTSNCSER FVSDMLVGGK CKNEIGSFTS KVQAGSSVYR ESGECKLDGE 180 AKVIVKDETN KRGEVLIGTG ADMCSLEDPM VWEGEPPALV SSDSSTKVPI CVDHIPQKPI 240 LASRDDVKIV SRDDDENSSG CTHPSTTTRY LRTAQRIGDR RIRKVLASRY WKAAPKMKDG 300 AHSNSYRDMR PIYHGRKNGY KRQRSQMNMP FKKRRLFDRS TVLKTNGGIS SESFFDSGEK 360 GITGNAPASC SKMQGANAIS SSVAGQHSVF QSRNSHVKLR IKSFRVPELF IEIPETATVG 420 SLKKTVMDAV TAVLGGGLCV GVLLQGKKLR DDTKTLQQTG ISQDDQLDSL GFTLEPNPPH 480 TPTPLCSGDS PRMLPCDVLQ PLTRYAPDPS SEASLEPHMA ALGSFIESDH DSAPSPTDTS 540 ADKSTTDSKA LVVVPEMSAE ALAVVPGNRK SKRFDIGQRR IRRPFSVAEV EALVQAVEKL 600 GTGRWRDVKM RAFENAKHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLTAHA 660 YWSQQQAKQQ LKHPESCVLV

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence

MVLQKRLDYG FNGFQVPVTP RAPRSARRRS TISKRIEDSS MGAFDLLATV AGKLLLEGES  60
SPASSHTSTG KEKCSIINDS CPNGDKPLKV EPCDQGSCDR KFFVSDNISQ GHNQSCSSKE  120
SPVHQNESHS VMTTSNCSER FVSDMLVGGK CKNEIGSFTS KVQAGSSVYR ESGECKLDGE  180
AKVIVKDETN KRGEVLIGTG ADMCSLEDPM VWEGEPPALV SSDSSTKVPI CVDHIPQKPI  240
LASRDDVKIV SRDDDENSSG CTHPSTTTRY LRTAQRIGDR RIRKVLASRY WKAAPKMKDG  300
AHSNSYRDMR PIYHGRKNGY KRQRSQMNMP FKKRRLFDRS TVLKTNGGIS SESFFDSGEK  360
GITGNAPASC SKMQGANAIS SSVAGQHSVF QSRNSHVKLR IKSFRVPELF IEIPETATVG  420
SLKKTVMDAV TAVLGGGLCV GVLLQGKKLR DDTKTLQQTG ISQDDQLDSL GFTLEPNPPH  480
TPTPLCSGDS PRMLPCDVLQ PLTRYAPDPS SEASLEPHMA ALGSFIESDH DSAPSPTDTS  540
ADKSTTDSKA LVVVPEMSAE ALAVVPGNRK SKRFDIGQRR IRRPFSVAEV EALVQAVEKL  600
GTGRWRDVKM RAFENAKHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLTAHA  660
YWSQQQAKQQ LKHPESCVLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-137	MYB_related family protein