PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001010.1_g000043.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 743aa    MW: 84348.3 Da    PI: 6.294
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001010.1_g000043.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS40.63.8e-13252555
                       GRAS  5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55
                               L++cA+a+++ d++ a++lL++++++ +p+gd++qRla+yf+ +L+ar + 
  Rmu_sc0001010.1_g000043.1  2 LTQCAQAMANFDQRTASELLKQIRQHTTPHGDATQRLAHYFADGLHARYSV 52
                               99*********************************************9765 PP
2GRAS381.21.2e-1163717413374
                       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                + L++cA+av++ d++ a++lL++++++ +p+gd++qRla+yf+ +L+arla+     y+ l + +ts    +e l+a+++  +
  Rmu_sc0001010.1_g000043.1 371 TMLTQCAQAVANFDQRTASELLKQIRQHTTPHGDATQRLAHYFADGLHARLAGAKIPSYSPLVSVQTS---AAEILKAYQVVIK 451
                                689**************************************************888888888888888...8************ PP

                       GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                                ++P+ k+s++ aN++I++ +e+++r+HiiDf+is+G+QWp+L+q L++Rp+gpp+lRiT+++ p++g   +e++eetg+rL+k+
  Rmu_sc0001010.1_g000043.1 452 ACPFKKMSQFFANRTIMKLAEKATRLHIIDFGISYGFQWPCLIQRLSQRPGGPPKLRITAIELPQPGfrPTERVEETGRRLEKY 535
                                ******************************************************************9***************** PP

                       GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                                A++++vpfe+nv +a+++e++++e++++++ E ++Vn+ ++l +++de+v ++s+rd+vLkl++++sP+++++   +  +n++ 
  Rmu_sc0001010.1_g000043.1 536 AKRFDVPFEYNV-IAQKWETIRIEDIKIDRTELIVVNCLHRLRNIPDETVMVNSPRDAVLKLIRKISPDLFIHGVVNGTYNAPF 618
                                ***********9.7********************************************************************** PP

                       GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                                Fl+rf eal ++ +lfd+le++++re+e+r++ E+e+ gr+i nvvaceg er+er et+++W+ r  +aGFk++pl++k  k+
  Rmu_sc0001010.1_g000043.1 619 FLTRFREALLHFYSLFDMLEVTISREDEQRVMFEQEIYGRDILNVVACEGLERVERPETYRQWQVRNLRAGFKQLPLDQKLLKE 702
                                ************************************************************************************ PP

                       GRAS 337 aklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +k++ + +   + +rv+e+ +++++gWk+r+++++S+W+
  Rmu_sc0001010.1_g000043.1 703 VKTMSKVMRyHNDFRVDEDGHWMLQGWKGRTIMALSFWK 741
                                ***9998877888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    
MLTQCAQAMA NFDQRTASEL LKQIRQHTTP HGDATQRLAH YFADGLHARY SVSHPMERFK  60
FDHGPVSVCP NPNLVNGFKI NHESTNPVLL ASKSDLSSDS SNEGSEVDGL DINDCNHPVL  120
KYINDILLEE DLEGKPCMLQ DCLALQAAEK SFYDVLNQKD PPLPDQPSSS VHQSSESSDD  180
DSPQSFRNSN GSFAVKTDWV WDPDCSPVQS SLFESSSNTR LVSDSLSELQ SLGNFGGVGE  240
ASKFLSNPKL EMFDLERFQL MPQGSVASES GDDGYNSTNV SKGKKTHQRE DSHFPEEERS  300
NKQSAAVGDD FEPQEMFDEV LLCPENHDAK LCADYESLKT EGEGKLQRNK QSTGLKAKRQ  360
SNIGELVDLC TMLTQCAQAV ANFDQRTASE LLKQIRQHTT PHGDATQRLA HYFADGLHAR  420
LAGAKIPSYS PLVSVQTSAA EILKAYQVVI KACPFKKMSQ FFANRTIMKL AEKATRLHII  480
DFGISYGFQW PCLIQRLSQR PGGPPKLRIT AIELPQPGFR PTERVEETGR RLEKYAKRFD  540
VPFEYNVIAQ KWETIRIEDI KIDRTELIVV NCLHRLRNIP DETVMVNSPR DAVLKLIRKI  600
SPDLFIHGVV NGTYNAPFFL TRFREALLHF YSLFDMLEVT ISREDEQRVM FEQEIYGRDI  660
LNVVACEGLE RVERPETYRQ WQVRNLRAGF KQLPLDQKLL KEVKTMSKVM RYHNDFRVDE  720
DGHWMLQGWK GRTIMALSFW KPT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein