PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000795.1_g000098.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 238aa    MW: 26402.5 Da    PI: 8.6104
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000795.1_g000098.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.42.7e-142789157
                               TT--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  1 rrkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               rr+R+t+t++ +++L+e+F++   r p+ e+ +++  +l    +++ ++V++WF N+Ra+ek+
  Rmu_sc0000795.1_g000098.1 27 RRSRWTPTTDHIRILKEFFYNkgVRSPTIEQVQRICLQLkwysKIEFKNVYFWFVNQRAREKQ 89
                               89******************7789*************************************97 PP
2Wus_type_Homeobox78.21.1e-252891365
          Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                               r+RWtPt++ i+iL+e ++ +G+r+P+ e++qri  +L+ y kie kNV++WF N++aRe+qk+
  Rmu_sc0000795.1_g000098.1 28 RSRWTPTTDHIRILKEFFYnKGVRSPTIEQVQRICLQLKWYSKIEFKNVYFWFVNQRAREKQKK 91
                               79*************987659*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MEPQTQQPTE DGGSNKVAGS SANMLCRRSR WTPTTDHIRI LKEFFYNKGV RSPTIEQVQR  60
ICLQLKWYSK IEFKNVYFWF VNQRAREKQK KRSTSDVHVP MQRSGLVGDD NVTNSSAPAS  120
ASASSAGVMI AFNRQMGNYG GYGSMNMEKS ARDCSISVGG GTSSTFFDMN LEQTFKEQRG  180
EDHQEIETLS LFPVHGEDIF GNMKTTFDGG GGHGGGSYIS LELSLSCEGK AGKSFWSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.18e-24WOX family protein