PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000675.1_g000024.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 527aa MW: 57984.2 Da PI: 10.0388

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000675.1_g000024.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.1	2.3e-16	342	402	3	57
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+t+++ ql++L+ l++ ++yp+ e+++e+ +l ++++++V++WFqN +a+e++ Rmu_sc0000675.1_g000024.1 342 NRWTPKPAQLRILQGLYYYkgHKYPTPEQIQEICLHLkpygQIEDKNVFFWFQNLKARERQ 402 7***********9988446************************************97 PP
2	Wus_type_Homeobox	91	1.1e-29	340	403	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RWtP+p Q++iL+ ly+ +G + P+ e+iq+i +L+ yG+iedkNVf+WFQN kaRerqk Rmu_sc0000675.1_g000024.1 340 TNNRWTPKPAQLRILQGLYYyKGHKYPTPEQIQEICLHLKPYGQIEDKNVFFWFQNLKARERQK 403 579*************988****************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MIKNPNLTYP TTEVSRDRVI THHSSSHHSS ASLTLSQTLR LKPLLLRRQP PDTHHSSSHH 60 SSASLTLSQT LSQTLRLKPL LLRRQPPDTC DDSRPVDLSS PPQIKICSAS DRDLFRRRSR 120 LVPPQIETGC SSYRDWLLLR SRLVPPQILR STSTQKVWSL DFVPSLRNAS TTDAEAKVAG 180 AGRTKTGDWR SFQLGGASSR TCSSLHRAPR AIWIPQTCIR ECGEQNPLKK STYGGRKVKK 240 LAGEEIRPIN FAKTISEIRP IGPPPTATVR TLIRGKPTYG PPATAYPFRN LPESDLLSAK 300 AVCHSASRFS RSPYTLSTRQ QLFRSTQAAG SSANTPIRPT NNRWTPKPAQ LRILQGLYYY 360 KGHKYPTPEQ IQEICLHLKP YGQIEDKNVF FWFQNLKARE RQKSIDLNFG STGSTGDDGS 420 IDLTLGSCVV YGVDPYSSSP FNANISTTSF GPTGGQSSME QRGGDHQEVE TLPLFPMHGE 480 DVLGNPNTAS EEGSVYGYYS GGSGGYNSGS HVSLELSLNP SGAADLA

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MIKNPNLTYP TTEVSRDRVI THHSSSHHSS ASLTLSQTLR LKPLLLRRQP PDTHHSSSHH  60
SSASLTLSQT LSQTLRLKPL LLRRQPPDTC DDSRPVDLSS PPQIKICSAS DRDLFRRRSR  120
LVPPQIETGC SSYRDWLLLR SRLVPPQILR STSTQKVWSL DFVPSLRNAS TTDAEAKVAG  180
AGRTKTGDWR SFQLGGASSR TCSSLHRAPR AIWIPQTCIR ECGEQNPLKK STYGGRKVKK  240
LAGEEIRPIN FAKTISEIRP IGPPPTATVR TLIRGKPTYG PPATAYPFRN LPESDLLSAK  300
AVCHSASRFS RSPYTLSTRQ QLFRSTQAAG SSANTPIRPT NNRWTPKPAQ LRILQGLYYY  360
KGHKYPTPEQ IQEICLHLKP YGQIEDKNVF FWFQNLKARE RQKSIDLNFG STGSTGDDGS  420
IDLTLGSCVV YGVDPYSSSP FNANISTTSF GPTGGQSSME QRGGDHQEVE TLPLFPMHGE  480
DVLGNPNTAS EEGSVYGYYS GGSGGYNSGS HVSLELSLNP SGAADLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	3e-18	WOX family protein