PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000574.1_g000025.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 432aa    MW: 48519.7 Da    PI: 6.4014
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000574.1_g000025.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS258.22.9e-79564282374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklf 84 
                                 +lLl++A+ v +++  +a++l +  + l+s++g+++qR++ yf +AL++r  r ++ +++k  ++++   ++ ++++a   +f
  Rmu_sc0000574.1_g000025.1  56 AQLLLAFADEVGKQQYDRARKLQNLCHFLSSSTGNTVQRVVYYFSKALRERTDReTGRNTSKGSESKDLLAMHLEKTMACCPAF 139
                                689*****************988888888*************************666777777777777777777777777778 PP

                       GRAS  85 sevs...PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetger 164
                                + ++   P++++++++  qaI+e+v++++rvH iD++i  G+Q + L+qaLasR e+p  +l++T+vgs  + s+++le tg+r
  Rmu_sc0000574.1_g000025.1 140 FACFlklPFYQVTQFAGIQAIVESVASAKRVHFIDLEIRSGGQCIVLMQALASRYEQPIeMLKVTAVGS-GTASRQKLEDTGKR 222
                                8876666***********************************************9666559********.5579********** PP

                       GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
                                La+fAe+l++pf+f++ +++ +++l+ ++++ + gEa+aV + l+  ++     +l+++ ++ +  +++l+P ++v++e ea++
  Rmu_sc0000574.1_g000025.1 223 LAQFAEALHLPFSFKIATVTGINNLNEDAFESEDGEATAVYCYLMRSSMR----TLPDCLESAITELRKLNPCLMVITEIEANL 302
                                ****************9999************************777776....55555566********************** PP

                       GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                 s+ F +rf ea+ yysa fd+l++ + + s  r+ +E+ +l+r+i+n++a e++ r+ rh +   Wr+ + ++G+ +++ls +
  Rmu_sc0000574.1_g000025.1 303 YSPVFEDRFNEAVFYYSAYFDCLDVCMDNSSPYRRELEETFLARQITNIIASEEE-RIFRHMKIDVWRSLFAKFGMVEAELSLS 385
                                ***************************************************9987.7*************************** PP

                       GRAS 333 aakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   qa+l  ++++ ++  +++ + ++l++gWk+ +++s+SaW+
  Rmu_sc0000574.1_g000025.1 386 SLYQADLTAKQFAcGKSCTLDMNGKCLTIGWKGTTILSLSAWK 428
                                *************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    
MSSVSRLSTV EVMRVAGARF IQFSSQKYAD DSIPKHVLGC APLGLSDQEV KEVEIAQLLL  60
AFADEVGKQQ YDRARKLQNL CHFLSSSTGN TVQRVVYYFS KALRERTDRE TGRNTSKGSE  120
SKDLLAMHLE KTMACCPAFF ACFLKLPFYQ VTQFAGIQAI VESVASAKRV HFIDLEIRSG  180
GQCIVLMQAL ASRYEQPIEM LKVTAVGSGT ASRQKLEDTG KRLAQFAEAL HLPFSFKIAT  240
VTGINNLNED AFESEDGEAT AVYCYLMRSS MRTLPDCLES AITELRKLNP CLMVITEIEA  300
NLYSPVFEDR FNEAVFYYSA YFDCLDVCMD NSSPYRRELE ETFLARQITN IIASEEERIF  360
RHMKIDVWRS LFAKFGMVEA ELSLSSLYQA DLTAKQFACG KSCTLDMNGK CLTIGWKGTT  420
ILSLSAWKFH AA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-47GRAS family protein