PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000552.1_g000023.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 353aa MW: 38665.5 Da PI: 8.4323

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000552.1_g000023.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.5e-19	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq++ Le+l+e+ r+psae ++ +++l +++ ++V++WFqN++a++++ Rmu_sc0000552.1_g000023.1 22 TTRWNPTKEQITMLENLYEQgVRTPSAEFIQAVTARLraygHIEGKNVFYWFQNHKARQRQ 82 58***************99************************************96 PP
2	Wus_type_Homeobox	109.3	2.3e-35	21	83	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+Pt+eQi++Le+ly++G+rtP++e iq +ta+L++yG+ie+kNVfyWFQN+kaR+rqk Rmu_sc0000552.1_g000023.1 21 NTTRWNPTKEQITMLENLYEQGVRTPSAEFIQAVTARLRAYGHIEGKNVFYWFQNHKARQRQK 83 689***********************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MEREDQHVKN GGLAHGVGLE NTTRWNPTKE QITMLENLYE QGVRTPSAEF IQAVTARLRA 60 YGHIEGKNVF YWFQNHKARQ RQKEKQEASL AYFNRFLHKA AASQYPLYPP PQYPCANVPS 120 EIGFYSQSHP KVPPQSVGVK RRPRIEKLDV PTRTCSGGGS GGYEPMRHGY GRGGCIDVND 180 ATNRLMSNSD DPETLPLFPL TPTGLLQGRD EGPSTSDGNY AQNSTALVSS SGIVEGHERR 240 GVFFSVQAPV LSGRGGAEAE EQASLTAPAM GWGTGRPPDT EVEAVWQLKP RVSALVVWVW 300 AWAFGPGLKL GLLGQGPALG LLGLFDFVFV SARQDWTWAW AYGLGLGSRP MGP

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MEREDQHVKN GGLAHGVGLE NTTRWNPTKE QITMLENLYE QGVRTPSAEF IQAVTARLRA  60
YGHIEGKNVF YWFQNHKARQ RQKEKQEASL AYFNRFLHKA AASQYPLYPP PQYPCANVPS  120
EIGFYSQSHP KVPPQSVGVK RRPRIEKLDV PTRTCSGGGS GGYEPMRHGY GRGGCIDVND  180
ATNRLMSNSD DPETLPLFPL TPTGLLQGRD EGPSTSDGNY AQNSTALVSS SGIVEGHERR  240
GVFFSVQAPV LSGRGGAEAE EQASLTAPAM GWGTGRPPDT EVEAVWQLKP RVSALVVWVW  300
AWAFGPGLKL GLLGQGPALG LLGLFDFVFV SARQDWTWAW AYGLGLGSRP MGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59340.1	1e-40	WOX family protein