PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000501.1_g000017.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 305aa    MW: 34876.3 Da    PI: 4.6094
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000501.1_g000017.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-163077148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT eEd +l ++++ +G g+W++ a   g++R++k+c++rw++yl
  Rmu_sc0000501.1_g000017.1 30 KGPWTVEEDSILMEYINTHGEGRWNSLAGNSGLKRSGKSCRLRWLNYL 77
                               79********************************************97 PP
2Myb_DNA-binding482.9e-1583126146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Rmu_sc0000501.1_g000017.1  83 RGNITLQEQLLILQLHSRWGNR-WSKIAEYLP-GRTDNEIKNYWRT 126
                                7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MDVDQYLLRG YTSSVTHELP SCDPEDDLRK GPWTVEEDSI LMEYINTHGE GRWNSLAGNS  60
GLKRSGKSCR LRWLNYLRPN VRRGNITLQE QLLILQLHSR WGNRWSKIAE YLPGRTDNEI  120
KNYWRTRVQK QAKQLNCDVN SKQFQDAMRY VWIPRLMERI RASSDSTVLS GQPTETTTSP  180
AFTPPDDYCL TNHSNTAAAG SSHYWIDPNY LPEASATSSG STELQDCLNI PEPTSTEFSE  240
LNCYPMNGQY YSSTNWSGCY QDGSEIQGSE QIESSNSWST PGGDLVENLW NEENIWFLQQ  300
QLNSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.12e-75MYB family protein