PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000467.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 185aa    MW: 20993.5 Da    PI: 6.6772
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000467.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.3e-14243748
                               HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  Rmu_sc0000467.1_g000012.1  2 EEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 43
                               9***************************************97 PP
2Myb_DNA-binding55.99.7e-184992146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                               rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  Rmu_sc0000467.1_g000012.1 49 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 92
                               7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MEEDLILINY IANHGEGVWN SLAKSAGLKR TGKSCRLRWL NYLRPDVRRG NITPEEQLLI  60
MELHAKWGNR WSKIAKHLPG RTDNEIKNYW RTRIQKHIKQ GDQSNSQGQS SEGTADQAST  120
SQMGSSSTTG LDPMETTYPL CPTTASYPVT LVQPPDHPNV VPPPDSNQES YWSMEDLWSM  180
QLLNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-72MYB family protein