PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000359.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family RAV
Protein Properties Length: 351aa    MW: 39827.7 Da    PI: 6.933
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000359.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.42.3e-105299255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                               ++kGV    ++g W A+I+       + +r++lg+f +++eAa a++ a+ kl++
  Rmu_sc0000359.1_g000010.1 52 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSENEAAMAYDSAAIKLRK 99
                               789996.566899****999......44*************************97 PP
2B389.52.7e-28178270185
                                EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                f+k+ltpsdv+k++rlv+pkk+a ++        +++   +++l+++d+  r W+++++y+k+s+++v+t+GW++Fvk+n Lk+
  Rmu_sc0000359.1_g000010.1 178 FQKELTPSDVGKLNRLVIPKKYAVKYfpcicetvEENGVDDVELVFYDKVMRAWKFRYCYWKSSQSFVFTRGWNRFVKENSLKA 261
                                99*****************************98854555899****************************************** PP

                                T-EEEEEE- CS
                         B3  77 gDfvvFkld 85 
                                +D+++F+  
  Rmu_sc0000359.1_g000010.1 262 NDVITFYTC 270
                                ******933 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MEDKASTMIN SSALKNNNSV AVPGETSGSN DTNFELRPTK RLRHDNDLSL AKFKGVVPQQ  60
NGHWGAQIYA NHQRIWLGTF KSENEAAMAY DSAAIKLRKG NESHRNFPWT NLTIQEPDFQ  120
NHLTTEEVIK MIRDGSYPSK FGAFVRSQTQ SQSEEVGKGT PSQITVHGNG QVLCRQLFQK  180
ELTPSDVGKL NRLVIPKKYA VKYFPCICET VEENGVDDVE LVFYDKVMRA WKFRYCYWKS  240
SQSFVFTRGW NRFVKENSLK ANDVITFYTC ESAELIRDES GEVTTTFSLI DVMHSEAENN  300
KCLVEKEGKL ELNLSGNSSY KLQEGECKHG EENKASMVEE KGVRLFGVNI N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-106RAV family protein