PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000353.1_g000028.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 273aa    MW: 31365.9 Da    PI: 6.3738
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000353.1_g000028.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.1e-193091157
                               TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               r++R+++t+eq+  Leel+++  ++p+++++++ ++ l    +++ ++V++WFqN+Ra+e++
  Rmu_sc0000353.1_g000028.1 30 RSSRWNPTPEQIMHLEELYRSgIKTPTTQQIRQVTAGLrnygRVEGKNVFYWFQNHRARERQ 91
                               689*****************99**************************************97 PP
2Wus_type_Homeobox109.42e-353193365
          Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                               ++RW+PtpeQi+ Leely+sG++tP++++i+++ta L++yG++e+kNVfyWFQN++aRerqk+
  Rmu_sc0000353.1_g000028.1 31 SSRWNPTPEQIMHLEELYRSGIKTPTTQQIRQVTAGLRNYGRVEGKNVFYWFQNHRARERQKR 93
                               79***********************************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MYAVVPVTFD EQGSDCFYSD KQPAAAAPPR SSRWNPTPEQ IMHLEELYRS GIKTPTTQQI  60
RQVTAGLRNY GRVEGKNVFY WFQNHRARER QKRRRELMSM YQSDSKQQQQ QQTLTNNTIS  120
SLHDKESAGG DFVRCLEVEQ QNRRTVPNLT VLSDQESSSV LQERMMSMVK SNSSKLLVEQ  180
SDSPGSTSDT NASATVIYTK LLDLHHYYDY GMVLTTPSIY KEFKEEEESR ETKTLELFPL  240
ESDNLKGAKD TKLPMSRTAS TNTTSDFMAD QYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.16e-26WOX family protein