PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000294.1_g000024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 430aa MW: 46746.9 Da PI: 5.4813 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.1 | 4.3e-10 | 271 | 319 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq Rmu_sc0000294.1_g000024.1 271 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 319 58**************************....999*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence |
MGSHDNEDMG FQHRNEGTLN CPSSGMSTNP LPEKVSRMAM SSGSIFKPSN APDPFFGSGW 60 DPLVSLSQSD NFGGSSVASQ SEFTNPPYPI AIETQGMSST SHLVQYPSDS SYVEMVPKLP 120 CFGSGSFSEM VGSFGLPECA GISNPGCVAN YNPNRDGGID RTSTMGTQSL DDRQVSEEGA 180 LGSSPNGRRR KRVPESSPNK NAEGELNKDM SGESSDYLKE QDEKKTKLEE NTAANLRGKQ 240 AGKQTKENSQ SGDAAKDSYI HVRARRGQAT NSHSLAERVR REKISERMRL LQELVPGCNK 300 ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA TVNPEVNIDI ERILSKDIMN PRNGSGAIFG 360 FSPGMNSSHP YPHGIFQGNS QNMPITAPQF PSLPQTVLDN ELQGLFHMGF DSSSNIDCLG 420 QNASRMKPEQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 188 | 227 | RRRKRVPESSPNKNAEGELNKDMSGESSDYLKEQDEKKTK |
2 | 189 | 228 | RRRKRVPESSPNKNAEGELNKDMSGESSDYLKEQDEKKTK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 9e-86 | bHLH family protein |