PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000288.1_g000006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 214aa MW: 23990.2 Da PI: 4.6637 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.2 | 9e-16 | 39 | 99 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+t+t++ql++L+el++ +yp+ e+++e+ +l ++++++ ++WFqN +a+e++ Rmu_sc0000288.1_g000006.1 39 NRWTPTPDQLRILQELYYDkvLKYPTPEQIQEIFLHLqqygQIEDKNLFFWFQNLKARERQ 99 7****************96679*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 91.5 | 8.1e-30 | 37 | 100 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RWtPtp+Q++iL+ely+ + l+ P+ e+iq+i +L++yG+iedkN f+WFQN kaRerqk Rmu_sc0000288.1_g000006.1 37 TNNRWTPTPDQLRILQELYYdKVLKYPTPEQIQEIFLHLQQYGQIEDKNLFFWFQNLKARERQK 100 689***************99688999*************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence |
MEPRTLQLME LQTQQQIEDE GNNQAAGSSA NTPIRQTNNR WTPTPDQLRI LQELYYDKVL 60 KYPTPEQIQE IFLHLQQYGQ IEDKNLFFWF QNLKARERQK LREFRNVRVG GSLDLNFGST 120 SSTDDGRSID LNFGSTGSTG TDGSIDLNFG SRVHYGVDPH SSSPFNTNTS TTSYGTAGGQ 180 TSMDQRGGDH QEVETLPLFP VHGEDVLGDP KTTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 2e-25 | WOX family protein |