PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000218.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 441aa MW: 50166.1 Da PI: 4.2573

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000218.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	62.7	1.2e-19	15	149	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknr 76 pG rF P ++elv +yL++ ++g+k++ + + ++d+y + ePw++ ++k+ +k++yf ++++k ++t+kr +r Rmu_sc0000218.1_g000011.1 15 LPGERFCPMEDELVLFYLQPMLSGQKVPGRNLvVFDCDLYGHqEPWEIWDAYKTrrpndlrLNKDIYFLTQHKKMSSTDKRVRR 98 589*********************998776699998879*742222223333334588************** PP NAM 77 atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g+Wk + k+v+s +g +vglkk +++ ++ + ++ W++ e+ l Rmu_sc0000218.1_g000011.1 99 TVGNGTWKGDDSGKPVKSLeTGCVVGLKKRFTYK--NEASVHNGCWILYEFYL 149 ****9999999988657889****98..44555699****976 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MRQEFAMEES RGNQLPGERF CPMEDELVLF YLQPMLSGQK VPGRNLVVFD CDLYGHQEPW 60 EIWDAYKTRR PNDLRLNKDI YFLTQHKKMS STDKRVRRTV GNGTWKGDDS GKPVKSLETG 120 CVVGLKKRFT YKNEASVHNG CWILYEFYLD QSLRDKKQKV KDYVLCLLRK NCEPQTKIEK 180 KRKQREEEEV LEHNYAYDDG ENYREQEEFL EPQAKRQQIV PSIDNATVPM PSEDDAFAAE 240 LEGLLPCSED DNVPSRAEAI GFQGEENGEV QQLAYDVQSC PSFGDYHGIF NPLPEQDFLL 300 EEMVEEMGMV EMEDLLVVNG ANSNMDVAEE NVLNSTLLHT PTSSMSAAYD GTDMPYLSMK 360 NGCTEPAGIN NICGGSIGFQ GGAYWPESLV EVPTEEKQKT ADGDCSDWLD SISFSPEENN 420 FLWSEVQWCS QLTLACNALI A

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MRQEFAMEES RGNQLPGERF CPMEDELVLF YLQPMLSGQK VPGRNLVVFD CDLYGHQEPW  60
EIWDAYKTRR PNDLRLNKDI YFLTQHKKMS STDKRVRRTV GNGTWKGDDS GKPVKSLETG  120
CVVGLKKRFT YKNEASVHNG CWILYEFYLD QSLRDKKQKV KDYVLCLLRK NCEPQTKIEK  180
KRKQREEEEV LEHNYAYDDG ENYREQEEFL EPQAKRQQIV PSIDNATVPM PSEDDAFAAE  240
LEGLLPCSED DNVPSRAEAI GFQGEENGEV QQLAYDVQSC PSFGDYHGIF NPLPEQDFLL  300
EEMVEEMGMV EMEDLLVVNG ANSNMDVAEE NVLNSTLLHT PTSSMSAAYD GTDMPYLSMK  360
NGCTEPAGIN NICGGSIGFQ GGAYWPESLV EVPTEEKQKT ADGDCSDWLD SISFSPEENN  420
FLWSEVQWCS QLTLACNALI A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-13	NAC family protein