PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000186.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 357aa MW: 39746.4 Da PI: 7.5689

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000186.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.8e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++ ++G+g +W + ++++g++R++k+c++rw++yl Rmu_sc0000186.1_g000014.1 14 KGPWSPEEDAKLKSYIDKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38	3.9e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Rmu_sc0000186.1_g000014.1 69 GGFSEEEDNIICSLYINIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MGRAPCCDKT KVKKGPWSPE EDAKLKSYID KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYINIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEQQAQNR KAAASLKQEI KRSSTTTNFH LPPDDFVNQV NPYWAPELPV VLPVMSYQTH 180 DAQVLDDHQA SIKNMLIKLG GRFSDTTNSM YSPIDHISST SSHQFYQNSG IDHMLACSPA 240 ANSNYAQLGP SPSPTMFHGV DHQSDLEAEL SELIFGNSQP HQQYDGLGGF YQMDTMNNGS 300 TGGTTSTSAE SEISWGDISS LVYSTTTPMV SEYENSCQQG VRPSDSAFAE STYFGMK

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MGRAPCCDKT KVKKGPWSPE EDAKLKSYID KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYINIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQQAQNR KAAASLKQEI KRSSTTTNFH LPPDDFVNQV NPYWAPELPV VLPVMSYQTH  180
DAQVLDDHQA SIKNMLIKLG GRFSDTTNSM YSPIDHISST SSHQFYQNSG IDHMLACSPA  240
ANSNYAQLGP SPSPTMFHGV DHQSDLEAEL SELIFGNSQP HQQYDGLGGF YQMDTMNNGS  300
TGGTTSTSAE SEISWGDISS LVYSTTTPMV SEYENSCQQG VRPSDSAFAE STYFGMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	3e-81	MYB family protein