PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0000087.1_g000025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 332aa MW: 37966.8 Da PI: 9.9324 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52 | 9.2e-17 | 48 | 87 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ t+ kR++g++KK +EL +LCd++++ ii+s+ Rmu_sc0000087.1_g000025.1 48 ITNDSARKATYKKRKKGLMKKVSELTTLCDIDACAIIYSP 87 89*************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence |
MSALNRAESL QGKSKPERPF LHSLLPSLQH FHLFFLAMTR KKVKLAYITN DSARKATYKK 60 RKKGLMKKVS ELTTLCDIDA CAIIYSPYDS QPEIWPSPLG VQRVLAQFKT MPEMEQSKKM 120 VNQESFLRQR INKAQEQLKK QKKDNREKEM ARVMFQSLTG KSLQGLTLSD LTDLGWVIDQ 180 HLKELHLRMK NIKEEVVKSQ NQVQGAQGVS SAVADHRMVA MKSNREDSGS NMAMKSGEEG 240 SSMQHAALDR QAFDHMHNME AMQLQMMHMA AQKQQNHWFM DMMNAPPQPP LPHPDNHEHM 300 GFTGEDMMLP FADHNHSTMW PNPPPAGGFN FP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 62 | RKKVKLAYITNDSARKATYKKRK |
2 | 59 | 63 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-62 | M-type_MADS family protein |