PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000071.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YB
Protein Properties Length: 272aa    MW: 30294 Da    PI: 7.5005
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000071.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.57.2e-57124220197
                      NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 
                                vreqdr+lPian+srimkk+lP+n+ki+kdak+tvqecvsefisfvtseasdkcq+ekrktingddllwa+atlGfedy+epl+
  Rmu_sc0000071.1_g000003.1 124 VREQDRYLPIANISRIMKKALPQNGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLR 207
                                69********************************************************************************** PP

                      NF-YB  85 vylkkyrelegek 97 
                                +yl++yreleg+ 
  Rmu_sc0000071.1_g000003.1 208 IYLARYRELEGDA 220
                                **********996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
LWSLPDRVLG SSGELRLLNL QWFAAFENQM KKKLERSRVS FSDELDPTES EGKRKNTAME  60
RGRKATVVDI QREFLSKTRE IQTHRLSLYT GIVLIMAEAP TSPAGGSHES GGEQSPQNGS  120
SSNVREQDRY LPIANISRIM KKALPQNGKI AKDAKDTVQE CVSEFISFVT SEASDKCQKE  180
KRKTINGDDL LWAMATLGFE DYIEPLRIYL ARYRELEGDA KGSARGGEGS AKGNPVGAMT  240
GQNSQFVHQP PLNYVNNQED YYVPLNNMGN GN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.11e-80NF-YB family protein