PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000050.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family BBR-BPC
Protein Properties Length: 281aa    MW: 31192.9 Da    PI: 10.152
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000050.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind332.21.4e-10112811301
                  GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki..rernlalsekkaavaerd.........maflqrdkalaernka 73 
                                mddd+ +  n+gyye +  +k +lglqlm+s+ erd+k+    r+  ++ + + +++rd         m+  +r++++++    
  Rmu_sc0000050.1_g000011.1   1 MDDDSLNMPNWGYYEAS--FKGHLGLQLMTSMGERDTKPfiPGRDPPVMVSANGYHPRDcvvqdapvpMSNYMRESWINQ---- 78 
                                999988889*****988..*******************9995555556888899*****999999999766699999999.... PP

                  GAGA_bind  74 lverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrak 157
                                    ++k+l++++++         +++vl++t+ ++++ q     l++++   r+e+   ++ +ee + +++    +kkrq++ 
  Rmu_sc0000050.1_g000011.1  79 ----RDKFLTMMPANP--------NYGVLPETSVAQHSMQ----ILQPPPDASRDER---VNRMEEPVVHKEGGGPSKKRQNGG 143
                                ....789999999655........499*****99997665....4555554444443...444556677777778888899999 PP

                  GAGA_bind 158 kpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSv 241
                                 pk++k kk++k    +k++++++   +r+k  kks+d+v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt++S+
  Rmu_sc0000050.1_g000011.1 144 APKAPKVKKPRK----PKDNSNPAV--PRVKPAKKSLDVVINGITMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSM 221
                                999999999999....444455555..789****************************************************** PP

                  GAGA_bind 242 yPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                yPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++np+DL++hWA+HGtnkfvtir
  Rmu_sc0000050.1_g000011.1 222 YPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 281
                                ***********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MDDDSLNMPN WGYYEASFKG HLGLQLMTSM GERDTKPFIP GRDPPVMVSA NGYHPRDCVV  60
QDAPVPMSNY MRESWINQRD KFLTMMPANP NYGVLPETSV AQHSMQILQP PPDASRDERV  120
NRMEEPVVHK EGGGPSKKRQ NGGAPKAPKV KKPRKPKDNS NPAVPRVKPA KKSLDVVING  180
ITMDISGIPI PVCSCTGAPQ QCYRWGCGGW QSACCTTNVS MYPLPMSTKR RGARIAGRKM  240
SQGAFKKVLE KLAAEGYNFA NPIDLRTHWA RHGTNKFVTI R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.11e-108BBR-BPC family protein