PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co8521931.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 502aa MW: 55279.6 Da PI: 8.528

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co8521931.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.1	3.9e-41	180	255	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+ dls+ak+yhr+h++C hsk+p+v+v+g+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+ Rmu_co8521931.1_g000002.1 180 RCQVEGCNIDLSSAKDYHRKHRICANHSKSPKVVVNGVERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKP 255 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MEWNEKHPSL WDWENVFMFG AKVTENPKKL QPTDWSVEGE RGMNSESFCS PGGDGGSGVS 60 GSDLGDGTSK SSKSGSVNSS VGESKKSNFS LEAFEAFPKD FVDKKQSARE AEALGSSPTH 120 EISAGSGEPL LSLKLGKRMY FEDVCAGNNA KTSAVSVIST PMGTKAKRFK SIGQSTAATR 180 CQVEGCNIDL SSAKDYHRKH RICANHSKSP KVVVNGVERR FCQQCSRFHG LSEFDEKKRS 240 CRRRLSDHNA RRRKPLPGAL RDQARLSSSL YSTDGRQDMS LVLDQAPCVY SRNATNLSWD 300 GACSFRLTPT KDYFPNPAKG GGTSRQLNLA ENRTSSSLAM LYQDSSRLPP SKGTASQVLN 360 RGAEESMISF NLDAPQNLNR ALSLLSTSSW ASCEAKPVSL DNTNHSYHTN MPRPVMQAMN 420 QGLPLSSEYW QNEQPSLDTT QVNVSHSQSN GSNQYQDLHL FKGPYEISPF LRNLETALVT 480 PSCSNRMEEF GGFRLRCEFM TC

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MEWNEKHPSL WDWENVFMFG AKVTENPKKL QPTDWSVEGE RGMNSESFCS PGGDGGSGVS  60
GSDLGDGTSK SSKSGSVNSS VGESKKSNFS LEAFEAFPKD FVDKKQSARE AEALGSSPTH  120
EISAGSGEPL LSLKLGKRMY FEDVCAGNNA KTSAVSVIST PMGTKAKRFK SIGQSTAATR  180
CQVEGCNIDL SSAKDYHRKH RICANHSKSP KVVVNGVERR FCQQCSRFHG LSEFDEKKRS  240
CRRRLSDHNA RRRKPLPGAL RDQARLSSSL YSTDGRQDMS LVLDQAPCVY SRNATNLSWD  300
GACSFRLTPT KDYFPNPAKG GGTSRQLNLA ENRTSSSLAM LYQDSSRLPP SKGTASQVLN  360
RGAEESMISF NLDAPQNLNR ALSLLSTSSW ASCEAKPVSL DNTNHSYHTN MPRPVMQAMN  420
QGLPLSSEYW QNEQPSLDTT QVNVSHSQSN GSNQYQDLHL FKGPYEISPF LRNLETALVT  480
PSCSNRMEEF GGFRLRCEFM TC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	237	254	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	1e-73	SBP family protein