PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8476507.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 300aa    MW: 32610.5 Da    PI: 8.0811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8476507.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.13.9e-10426527
                               --SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                               +C +++rtG+Ck+ ++CkF+H++
  Rmu_co8476507.1_g000001.1  4 ECAYYLRTGQCKFASTCKFHHPQ 26
                               6********************97 PP
2zf-CCCH38.61.8e-12161187127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                +++++C+f+++tG Ck+G+ C+F+H++
  Rmu_co8476507.1_g000001.1 161 PGQPECQFYMKTGDCKFGAVCRFHHPR 187
                                5789*********************96 PP
3zf-CCCH40.83.6e-13207233127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                ++++lC f++r+G+Ck+G++CkF H++
  Rmu_co8476507.1_g000001.1 207 PGEPLCIFYSRYGICKFGPSCKFDHPM 233
                                589**********************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
NEIECAYYLR TGQCKFASTC KFHHPQPTNM MVSLSGSPVY PTVQSPTTPG QQSYPGGVTN  60
WSRASFIPSP RWQGPSSYAP LIVPQGVVSV PGWSPYSGQV GSISTSEGQQ QTIGSSQVYG  120
TPRQREPENS GSQGAFSSYR SGSIPVGFYA LQRENVFPER PGQPECQFYM KTGDCKFGAV  180
CRFHHPRERL IPAPDCVLSP IGLPLRPGEP LCIFYSRYGI CKFGPSCKFD HPMGIFTYNL  240
SASSSAESPA RRLLGSTSGT TSLNLSSEGL VEAGSTKPRR LSLSEPRQMP SADENIDTEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-103C3H family protein