PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8458813.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | HB-other | ||||||||
Protein Properties | Length: 211aa MW: 24204.2 Da PI: 6.3979 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.8 | 6.7e-22 | 81 | 136 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e+lF+++++p+ ++r++L+ lgL+ rqVk+WFqNrR+++k Rmu_co8458813.1_g000001.1 81 KKRYHRHTAHQIQEMENLFKECPHPDDKQRQKLSLDLGLKPRQVKFWFQNRRTQMK 136 688999***********************************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MGGGNVVNSE TLFSSPMQNP NFNFMPFQPF SSILPKEETG LMTRGKEEMM ESGSGSEHAE 60 EKYSGNEQET EEQLQQQPPK KKRYHRHTAH QIQEMENLFK ECPHPDDKQR QKLSLDLGLK 120 PRQVKFWFQN RRTQMKAQQD RADNVMLRAE NDTLKNENYR LQAALRNIIC PNCGGAAMIG 180 DIALDEHQLH LENARLREEV CNSIVAMAGN C |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 7e-57 | HD-ZIP family protein |