PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8327627.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | Trihelix | ||||||||
Protein Properties | Length: 238aa MW: 26717.6 Da PI: 9.4919 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.2 | 6.5e-16 | 22 | 110 | 2 | 71 |
trihelix 2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 Wt e+++Liea++ +eer ++ ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk++e Rmu_co8327627.1_g000001.1 22 WTVGETMVLIEAKKMDEERRIMKRsgsgsgdhgadqtprsiskPAELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVRE 105 *************95555443222234555666666666666699*************************************** PP trihelix 67 gekkr 71 ek+ Rmu_co8327627.1_g000001.1 106 YEKRS 110 *9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MAEIQGGNSG SFVMRDYRKG NWTVGETMVL IEAKKMDEER RIMKRSGSGS GDHGADQTPR 60 SISKPAELRW KWVEDYCWKK GCLRSQNQCN DKWDNLMRDY KKVREYEKRS VGVGENKELA 120 SYWKLEKSER KERNLPTNMV PQIYESLVEV VEKREMGRIV VGGGGASVSG SISPNPNIGY 180 AVERPIISGI HQSTVLSPPP VLQQHLIQPQ PISAMHLLPA PLAAQPPPPL PYSQPIPP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 8e-59 | Trihelix family protein |