PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_co8045644.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 165aa MW: 18663.5 Da PI: 9.0543 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.2 | 5.9e-20 | 20 | 62 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i sn qvtfskR g++KKA+EL++LC++e+ +i+fs+ +k Rmu_co8045644.1_g000001.1 20 IPKRSNLQVTFSKRCSGLFKKASELCTLCGVEIVIIVFSPANK 62 667899**********************************998 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 165 aa Download sequence |
MAMKSKKPNQ GRQKIVIAKI PKRSNLQVTF SKRCSGLFKK ASELCTLCGV EIVIIVFSPA 60 NKPFSFGHPS VESLISRFLT PSHLSVSRST QHPQYCREVS VEHKLNMQLT QTQGHLEAEK 120 QRGEALDKLS EDSERSSHCW WENSIEELGL DELQTLKAAL EELKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 8e-52 | M-type_MADS family protein |