PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0241071
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 655aa    MW: 74409.1 Da    PI: 5.8559
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0241071genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS262.12e-802896531374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfse 86 
                             l +lLl++Ae v  +++e+a++lL +++ las +g+p+q+++ yf+eAL++r+ +  ++ly +   +e s++     +  a+ + ++
  RcHm_v2.0_Chr7g0241071 289 LAHLLLAAAEKVGYQQFERASRLLLQVEWLASFKGTPVQKVVCYFAEALRERIEK-ETGLYTSKGNEEMSHYVhGLGTNLAFIACHQ 374
                             579***************************************************9.7778877655555544444445555556777 PP

                    GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeel 172
                               P++ + +++a q++ e v++e+r+H iD++i  G+QW  L++aLa+R+e p   l iT+vg      k++++etgerL+++A +l
  RcHm_v2.0_Chr7g0241071 375 EVPFHPVLQFAAIQTMIENVANESRIHLIDLEIRFGTQWTGLMEALAEREECPVeLLTITAVGV---RGKQNIKETGERLTSVAMSL 458
                             78************************************************7666489******9...589***************** PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                             ++pf+f+ +++++++d++ + ++  + + al+V   l l ++ +++ +le+    +++++++++P ++vv+e ea+hns+sF++rf+
  RcHm_v2.0_Chr7g0241071 459 NLPFQFKEVIVSDMQDINDRLFDEIEdDQALVVYAPLVLRTMIARPRCLEN----LMRVMRNINPSLMVVIEVEANHNSPSFVNRFI 541
                             *****************999996555499*********************9....******************************** PP

                    GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                             +al y+sa+fd++e+ + +e + r+ +E  ll++ i+n+va+eg+er++r  ++  Wr+ + ++ + ++++s++   qa+ + ++v+
  RcHm_v2.0_Chr7g0241071 542 DALFYHSAFFDCVETCM-TEGKSRVIME-GLLREGIRNIVAAEGSERVARSVKMDVWRAFFASFSMVEMSFSNTSLYQANEIAKEVS 626
                             ***************97.3445555555.56******************************************************** PP

                    GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 +++++ ++l+ gWk+ p+ s+SaW+
  RcHm_v2.0_Chr7g0241071 627 C--TTLDKNGKCLIVGWKGTPIHSLSAWK 653
                             4..59***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    
MANAFFSFTP FDFEIQGGLS PPQLEDYDIE DTVMFNVRKG DHLFGLEDQL GEMNTPSEHG  60
FYLDNNKAKK GVVESHLSKD QNQHHDLDHQ QQQQQSKPNF LILDNFNSET VSSQRGFYHA  120
NKAGKDHQHH HHQEQQQYSK SSSSNLENFS SFDFTFPSGQ VTQPVEDSAW FTHSQIGGSD  180
IVETIKKMQP PQSYLATLEL LNSYGSAFKK LRGGRQRNSR IVKGKEIDQN SSYVVSGKQK  240
LSIEEVMRVA GARFVQFSSQ GYEYFYMSMH PFGYALSGLC EEETKDVELA HLLLAAAEKV  300
GYQQFERASR LLLQVEWLAS FKGTPVQKVV CYFAEALRER IEKETGLYTS KGNEEMSHYV  360
HGLGTNLAFI ACHQEVPFHP VLQFAAIQTM IENVANESRI HLIDLEIRFG TQWTGLMEAL  420
AEREECPVEL LTITAVGVRG KQNIKETGER LTSVAMSLNL PFQFKEVIVS DMQDINDRLF  480
DEIEDDQALV VYAPLVLRTM IARPRCLENL MRVMRNINPS LMVVIEVEAN HNSPSFVNRF  540
IDALFYHSAF FDCVETCMTE GKSRVIMEGL LREGIRNIVA AEGSERVARS VKMDVWRAFF  600
ASFSMVEMSF SNTSLYQANE IAKEVSCTTL DKNGKCLIVG WKGTPIHSLS AWKFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-46GRAS family protein