PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0236441
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 285aa    MW: 32452.2 Da    PI: 5.1128
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0236441genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM713.1e-2261422127
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkya.....tgkrknr.at 78 
                             p+GfrFhPtdeel+ +yL+ k + ++ + + v++e+d+y ++ePw +       + ++++++fF+  +kk++      ++r++r + 
  RcHm_v2.0_Chr7g0236441   6 PVGFRFHPTDEELIGHYLHLKNNPNSATPSLVLPEFDLYgEAEPWIIWDaygGPNLKQQDLFFFTLLKKKANprgghASTRHSRrVG 92 
                             89*******************99999777789*****99457*****74233333377899***99888877665553445555478 PP

                     NAM  79 ksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                             +sg+W++   +++++ +  +++ +g k+ L + ++  p+ ++  W+m+ey+
  RcHm_v2.0_Chr7g0236441  93 SSGTWSQGEPSRPIFGEknQETPIGRKTKLRYENKLVPE-QHGCWIMEEYT 142
                             8**************98545555********99777777.899*******7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MDRCFPVGFR FHPTDEELIG HYLHLKNNPN SATPSLVLPE FDLYGEAEPW IIWDAYGGPN  60
LKQQDLFFFT LLKKKANPRG GHASTRHSRR VGSSGTWSQG EPSRPIFGEK NQETPIGRKT  120
KLRYENKLVP EQHGCWIMEE YTSVDDQSSC PAAHDHYVIC RLRENKTGQR RKSQDDDDHH  180
PKPRKKPKSL TVADPQPAFT TNEARKTVSL NQSPNPEQQF ENELIISEGE AQSSISNCIG  240
MPEDIDWLDL ALEDIDWLDL ALEEVEGDRL SPALAEQQSL TFQLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183189PRKKPKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-15NAC family protein