PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0235201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 20279.9 Da PI: 5.3178 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 19 | 70 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + ykG+r + +g+Wv eIr+p+++ r++lg+++t++eAa+a++aa +++ge RcHm_v2.0_Chr7g0235201 19 CLYKGIRMRA-WGKWVTEIRVPKSG---GRIWLGSYDTPDEAARAYDAAVYCIYGE 70 56*****998.**********9543...8**********************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MDLPTTSKSK KVRREKTPCL YKGIRMRAWG KWVTEIRVPK SGGRIWLGSY DTPDEAARAY 60 DAAVYCIYGE CGRFNFPDFR RPVLPAGSTV SLSKGDIQQI AMNFASANVP ESLPVSATVK 120 TEVQADTPAS PNVLVSKDMA SAYEVKVDPL APTYASGAGS ADPPEDFHLD DFRMLDTDWI 180 ADFY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 3e-48 | ERF family protein |