PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0231191
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 273aa    MW: 32488.1 Da    PI: 9.3876
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0231191genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.68.4e-22161493128
                     NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknratks 80 
                             pG rF P ++elv +yLk+ ++g+ ++  +  + ++d+y + ePw++ +++k+        +k++yfF+++++ ++t++r +r++ +
  RcHm_v2.0_Chr7g0231191  16 PGERFCPMEDELVLFYLKPMLSGEMVPGRNRvVFDCDLYGHqEPWEIWEAYKTrrpndlrLNKDIYFFTQHKTMSSTDTRIRRTVGN 102
                             89***********************8775544999****8879****743333234333334588********************** PP

                     NAM  81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             g+Wk   + k+v+s  +g++vglkk L++ + +a++ ++  W++ e+ l
  RcHm_v2.0_Chr7g0231191 103 GTWKGDDSGKPVKSLeTGRVVGLKKRLTYKN-QASE-HNGCWILYEFYL 149
                             ****9999999988668999********984.3333.6999*****986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MQQEFAVEES RGNRLPGERF CPMEDELVLF YLKPMLSGEM VPGRNRVVFD CDLYGHQEPW  60
EIWEAYKTRR PNDLRLNKDI YFFTQHKTMS STDTRIRRTV GNGTWKGDDS GKPVKSLETG  120
RVVGLKKRLT YKNQASEHNG CWILYEFYLD PSLRDKKQKV EDYVLCLLRK NGEPKAKIKK  180
RRKQREEEDV LENNYACDDG ENTNKEQPQA KRQRMGEQNG DSNTLFPRFN QATIMECLFH  240
YRRKISSGRK CYNKWVLETI MEYRRKIFCG MIY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179183KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.22e-14NAC family protein