PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0230611 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 245aa MW: 27822.1 Da PI: 7.6205 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.3 | 1e-21 | 6 | 142 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk...kvkaeekewyfFskrdkkya.....tgkrknr.at 78 p+G+rFhPtdeel+ +yL+ k + ++ + + v++e+d+y ++ePw + + ++++++fF+ +kk++ ++r++r + RcHm_v2.0_Chr7g0230611 6 PVGLRFHPTDEELIGHYLHLKNNPNSATPSLVLPEFDLYgEAEPWIIWDaygGPNLKQQDLFFFTLLKKKANprgghASSRHSRrVG 92 89*******************99999777789*****99457*****74233333377899***99888877665543335555378 PP NAM 79 ksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127 +sg+W++ +k+++ + +++ +g k+ L + ++ p+ ++ W+m+ey+ RcHm_v2.0_Chr7g0230611 93 SSGTWSQGEPSKPIFGEknQETPIGRKTKLRYENKLVPE-QHGCWIMEEYT 142 8**************98545555********99777777.899*******7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MDRCFPVGLR FHPTDEELIG HYLHLKNNPN SATPSLVLPE FDLYGEAEPW IIWDAYGGPN 60 LKQQDLFFFT LLKKKANPRG GHASSRHSRR VGSSGTWSQG EPSKPIFGEK NQETPIGRKT 120 KLRYENKLVP EQHGCWIMEE YTSVDDQSSC PAAHDHYVIC RLRENKTGQR GAIRRKSQDD 180 DDHHPKPRKK PKSLTVSDPQ PAFTTNEARK IVSLNQSPNP EQQFENELII SEGEAQSSIS 240 NCIGY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 187 | 193 | PRKKPKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66300.1 | 1e-11 | NAC family protein |