PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0224941
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 308aa    MW: 34916.2 Da    PI: 9.432
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0224941genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.2e-16241011999
                             -HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                      B3  19 pkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                             pk++  e+   +g   ++ +  l+ +sg+ W v+l  +++ ++ ++++GW+ Fvk+++L+ gDf++F++dg+s+f  +v ++++
  RcHm_v2.0_Chr7g0224941  24 PKRCYVENfiwNGR--SPHECALRGPSGQCWAVEL--KRTENGLFFQNGWQCFVKDHHLELGDFLIFRHDGESKF--NVIIYDR 101
                             56665566666333..456799*************..********************************999999..7777765 PP
2B344.72.5e-142022831795
                             E--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                      B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                              +pk+   + g+   ++kt++led++grsW v l+     kk+ r      lt+GW++ ++an++  gD+++F+l++  ++ ++++
  RcHm_v2.0_Chr7g0224941 202 GFPKELGVAKGLM--NKKTMKLEDPTGRSWPVSLRLskfYKKDARlydrLDLTSGWSQICEANKISPGDTIIFELVK--QRVMKIH 283
                             4566665555554..4579***************87777555555566689***********************986..3434555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MGEEVMACFK KQGKCSMSGK VNDPKRCYVE NFIWNGRSPH ECALRGPSGQ CWAVELKRTE  60
NGLFFQNGWQ CFVKDHHLEL GDFLIFRHDG ESKFNVIIYD RSACEKDVKV AKRRMNCSVC  120
LRNNGNQARV KDEVLDLVTE NNKNIDSRGE AVVADEKGND VMSGKRPANG YLEETSDGSI  180
LFKSENPCFQ RILTKHSKYH IGFPKELGVA KGLMNKKTMK LEDPTGRSWP VSLRLSKFYK  240
KDARLYDRLD LTSGWSQICE ANKISPGDTI IFELVKQRVM KIHIIEVGRM RGKGCAVKLV  300
APNVKSSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-16B3 family protein