PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0210151

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 345aa MW: 37960 Da PI: 7.4746

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0210151	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.4	3.4e-10	92	116	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ RcHm_v2.0_Chr7g0210151 92 FKTKLCCKFRA-GTCPYVTNCNFAHS 116 69*******.***********8 PP
2	zf-CCCH	18.6	3.2e-06	165	190	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ RcHm_v2.0_Chr7g0210151 165 YKGRHCKKFYTEEGCPYGDNCTFLHD 190 78888********************7 PP
3	zf-CCCH	43.5	5.1e-14	227	252	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg RcHm_v2.0_Chr7g0210151 227 WKTRICNKWELTGYCPFGSKCHFAHG 252 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MSYARETNVV QVITGNGGGA DMWSGDQAVW ATEDEYQVWN NGDALGDSMS NSNYDQRQSQ 60 SRSGSEPPNK KSRNTQDVTS SNRSKAIGKM FFKTKLCCKF RAGTCPYVTN CNFAHSIEEL 120 RRPPPNWQEI VAAHEEEKAV SSEPREEFQI PIVTTGYGVE TQRSYKGRHC KKFYTEEGCP 180 YGDNCTFLHD ESSKNRESVA ISLGPGGYGG AAAAAAAGGA NNKPSNWKTR ICNKWELTGY 240 CPFGSKCHFA HGVAELHRYG GGLVDGEIRD SSVPLDNKQG GMPLKTPADN VVVSVPIVPH 300 SDLYHGVPSQ RSSIVSQRPG QRAHQKWKGP DKISRIYGDW IDDIE

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MSYARETNVV QVITGNGGGA DMWSGDQAVW ATEDEYQVWN NGDALGDSMS NSNYDQRQSQ  60
SRSGSEPPNK KSRNTQDVTS SNRSKAIGKM FFKTKLCCKF RAGTCPYVTN CNFAHSIEEL  120
RRPPPNWQEI VAAHEEEKAV SSEPREEFQI PIVTTGYGVE TQRSYKGRHC KKFYTEEGCP  180
YGDNCTFLHD ESSKNRESVA ISLGPGGYGG AAAAAAAGGA NNKPSNWKTR ICNKWELTGY  240
CPFGSKCHFA HGVAELHRYG GGLVDGEIRD SSVPLDNKQG GMPLKTPADN VVVSVPIVPH  300
SDLYHGVPSQ RSSIVSQRPG QRAHQKWKGP DKISRIYGDW IDDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-126	C3H family protein