PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0202251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | YABBY | ||||||||
Protein Properties | Length: 230aa MW: 25718.1 Da PI: 8.4034 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 229.2 | 1.1e-70 | 14 | 188 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaae.shldeslkeelleelkveeenlksnve 87 d+ seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++ + + +hl++s+ + +++ ++++ +n + RcHm_v2.0_Chr7g0202251 14 DHLAPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQfHHLGHSFFSQTNSHNNLLDQEIPMNPT 100 57789*****************************************98888776665543678888887755555555555555543 PP YABBY 88 ......keesastsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 +++s+ ++ + + +e+pr+p ++rPPekrqrvPsaynrfik+eiqrik+ nPdishreafsaaaknWahfP+i RcHm_v2.0_Chr7g0202251 101 pnflmnNQTSSLNDFA---VrpRGGVVDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHI 184 0000003333333333...2336677899***999**************************************************** PP YABBY 167 hfgl 170 hfgl RcHm_v2.0_Chr7g0202251 185 HFGL 188 **97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MSSSNSAAST LSLDHLAPSE QLCYVHCNIC DTVLAVSVPC TSLFKTVTVR CGHCTNLLPV 60 NMRGLLLPSP NQFHHLGHSF FSQTNSHNNL LDQEIPMNPT PNFLMNNQTS SLNDFAVRPR 120 GGVVDELPRP PVINRPPEKR QRVPSAYNRF IKDEIQRIKS VNPDISHREA FSAAAKNWAH 180 FPHIHFGLMP DQNTVKKTNV RQQEAGEDVL MKDHNGFFAA ANNNVRVSPY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 4e-82 | YABBY family protein |