PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0199301
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 240aa    MW: 27339.2 Da    PI: 5.0873
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0199301genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-1868118155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             + y+GVr++  +++Wv+e+r+p   +k++r++lg++ t e+Aa+a++ a+++l+g
  RcHm_v2.0_Chr7g0199301  68 PVYRGVRRRN-NNKWVCEVREP---NKKTRIWLGTYPTLEMAARAHDVAALALRG 118
                             68*****887.8******9998...347*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MNSSYQFSDS NQQSLESVSS IDKPESSSLS DTSFTTRRSP HSDGAVILAS SRPKKRAGRR  60
VFKETRHPVY RGVRRRNNNK WVCEVREPNK KTRIWLGTYP TLEMAARAHD VAALALRGKQ  120
ACLNFADSVW RLPIPASKDQ LDIRRAAAEA AETFRPEEFG GVSSSCDDNE REYEDENVEM  180
DNEKKNDGFY EDEEGLFDMP RLLTSMAEGP LLSPPRHYLD SMNWADDQVD SESNFSLWSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-54ERF family protein