PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0196701
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 321aa    MW: 36592.3 Da    PI: 7.2637
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0196701genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171463148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                            rg W++eEde+l+++++ +G g+W+++++  g  + R++k+c++rw++yl
  RcHm_v2.0_Chr7g0196701 14 RGLWSPEEDEKLLRYITTYGHGCWRKVPEQAGlrLQRCGKSCRLRWLNYL 63
                            788*********************************************97 PP
2Myb_DNA-binding49.78.2e-1669113147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg +T++E++l+++++   G++ W+ Ia++++ gRt++++k++w+++
  RcHm_v2.0_Chr7g0196701  69 RGVFTPDEEKLIIRLHGVVGNR-WAHIAKCLP-GRTDNEIKNYWNSW 113
                             899*******************.*********.************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MGHHYCCKER KVKRGLWSPE EDEKLLRYIT TYGHGCWRKV PEQAGLRLQR CGKSCRLRWL  60
NYLRPDIKRG VFTPDEEKLI IRLHGVVGNR WAHIAKCLPG RTDNEIKNYW NSWIKKKLEK  120
PSSPMTTSAD HHHQYSQMAC LNPNNQDHIV NQTFIARPSA YPLYMFEAAS LDHDGTTRAN  180
NININVHVDQ HFPLNVNSNN LGAWILDRHN VQPLPSTAPF TNMDANLLMP SLIGSTTAVN  240
ANMVEVESCS NIDEEGDISM ECLQSHQDLI AVVHSRQQQP CSNFHFCWDT VEEQHGGDEI  300
AGPLHRNTGA NMMSSSLPSY L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.12e-72MYB family protein