PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0191351

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 997aa MW: 111494 Da PI: 5.6537

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0191351	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41	3.5e-13	45	121	16	99
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + lp k a+ ++ ++ led++g +W+v + + g+ +++GW+ F+ +++L++gDf+vF ++ s f +vk++++ RcHm_v2.0_Chr7g0191351 45 MELPPKVARILLLS---DRRTFLEDSRGLRWKVAI--SSVNGSWAFQQGWNAFALDHDLQVGDFLVFNYVVGSHF--TVKIYDN 121 55666666333333...335789**********..555556789********************9976888..9999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 997 aa Download sequence
MVHDFEACAD CTQKCLLIHG NKKSGSHIET SFFKIMFGKQ FSKFMELPPK VARILLLSDR 60 RTFLEDSRGL RWKVAISSVN GSWAFQQGWN AFALDHDLQV GDFLVFNYVV GSHFTVKIYD 120 NSGCEVNLFE TIHQNNRNRV HTDGQCHTIG KSTVSKSVSD TFAGPDAEIS KCLNEVHGMK 180 KPLIITENAS DHDDDERSKC KRKAEFADDM SCMMEREYGH QQGDNRVRIL DLSSFESFKK 240 IKTCGSDGSN KVAAVNETHS HHADSSLKLR NEVSSVKIPV AKELVDRVIP SDASEIERTQ 300 KNNYSEYKVK GAPLSDKDSS TNVTSGHLFP TLPENPEQKE EIFSDISNRA AKKCQSANVS 360 GNDHQVAVSG NEHDLIDDTC QSANKKITEI SKSCDKVMKV IENKPVELTS HPCGQEVIPE 420 SNDIVMMNIG KESVDLTSDP CSREVIPERK DKAGTIFENV IVDLTSDQCS QEFIEKEESL 480 DLSTKVGIQI PSGPAEFERT EECNKSEAKV NRVPSDKDSC TETSGHPFPT HSENPEENGE 540 TTSKKATKEC RNADGSELLS GKDQVVPSQK EPDLMYASSP RDNKKLTGIS ESIHNPLTFE 600 CQNYDVIINE KESVEVTCQD VIPQRKDTII ENKSVEVTLE LCRQEVIPER KDTNVIGEES 660 VDLTLDPSCQ EFTPETKGES LKVFNRVHRQ LANTNIRVVP SDASDLERTE KRNYSAVKVR 720 KVSTSDKVPH TKQTSCHLNP IRHVHVEEDK TNIPKISNRG INKLKTTDGS VAASQKEQVS 780 IGDSCQQAKK KFTGISNSFE APVTSGSQYY SAKMSKIMEK EFVNSSSDPC SQEIIPEVDA 840 TSKLSNKLQS QSNFARKNDS ALSVVKPEPI EDAGATFPSF TISCLATDRQ SFLELPKSLP 900 LPLNTMKGRS KLDRRIVYLQ GPDKRLWPVL YIQKFFFRTL ANGWEAFSMA NNIEQGDRCT 960 IEVTNQTEGI CTVHIVKMRD DMEFYEEYEH SPLIDLS

Sequence ? help Back to Top

Protein Sequence Length: 997 aa Download sequence

MVHDFEACAD CTQKCLLIHG NKKSGSHIET SFFKIMFGKQ FSKFMELPPK VARILLLSDR  60
RTFLEDSRGL RWKVAISSVN GSWAFQQGWN AFALDHDLQV GDFLVFNYVV GSHFTVKIYD  120
NSGCEVNLFE TIHQNNRNRV HTDGQCHTIG KSTVSKSVSD TFAGPDAEIS KCLNEVHGMK  180
KPLIITENAS DHDDDERSKC KRKAEFADDM SCMMEREYGH QQGDNRVRIL DLSSFESFKK  240
IKTCGSDGSN KVAAVNETHS HHADSSLKLR NEVSSVKIPV AKELVDRVIP SDASEIERTQ  300
KNNYSEYKVK GAPLSDKDSS TNVTSGHLFP TLPENPEQKE EIFSDISNRA AKKCQSANVS  360
GNDHQVAVSG NEHDLIDDTC QSANKKITEI SKSCDKVMKV IENKPVELTS HPCGQEVIPE  420
SNDIVMMNIG KESVDLTSDP CSREVIPERK DKAGTIFENV IVDLTSDQCS QEFIEKEESL  480
DLSTKVGIQI PSGPAEFERT EECNKSEAKV NRVPSDKDSC TETSGHPFPT HSENPEENGE  540
TTSKKATKEC RNADGSELLS GKDQVVPSQK EPDLMYASSP RDNKKLTGIS ESIHNPLTFE  600
CQNYDVIINE KESVEVTCQD VIPQRKDTII ENKSVEVTLE LCRQEVIPER KDTNVIGEES  660
VDLTLDPSCQ EFTPETKGES LKVFNRVHRQ LANTNIRVVP SDASDLERTE KRNYSAVKVR  720
KVSTSDKVPH TKQTSCHLNP IRHVHVEEDK TNIPKISNRG INKLKTTDGS VAASQKEQVS  780
IGDSCQQAKK KFTGISNSFE APVTSGSQYY SAKMSKIMEK EFVNSSSDPC SQEIIPEVDA  840
TSKLSNKLQS QSNFARKNDS ALSVVKPEPI EDAGATFPSF TISCLATDRQ SFLELPKSLP  900
LPLNTMKGRS KLDRRIVYLQ GPDKRLWPVL YIQKFFFRTL ANGWEAFSMA NNIEQGDRCT  960
IEVTNQTEGI CTVHIVKMRD DMEFYEEYEH SPLIDLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	4e-10	B3 family protein