PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0190881
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 529aa    MW: 58827.2 Da    PI: 6.3072
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0190881genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.39.4e-1161555281374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklf 84 
                             lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++La+rla  ++  +  + ps+ + k+   ++++  al+l 
  RcHm_v2.0_Chr7g0190881 155 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLASRLALVQPLGAVGFVPSKLNAKDyalMDKKEEALRLV 241
                             689***************************************************9666666666777777777789999999***** PP

                    GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerL 165
                             +e++P ++f+h++aN+ Ilea+ege+ vH++D++++    +G QW  L+q+La+R+++pp  +lRiTgvg      +++l  +ge L
  RcHm_v2.0_Chr7g0190881 242 YEICPHIQFGHFVANSSILEALEGESFVHVVDLGMTlglpHGDQWQGLIQSLATRAGQPPvsRLRITGVGL----CADRLLIIGEEL 324
                             ********************************99873333667*************9999899********....************ PP

                    GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                             + +A++lg+++ef+  v+++le+l++e++++ +gE+l+Vn++lqlh +++es    +   +vL+++ +lsPk++v+veq+++hn++ 
  RcHm_v2.0_Chr7g0190881 325 EAYADSLGINLEFSC-VESNLENLKPEDIKIFEGEVLVVNSILQLHCVVKESRGALN---SVLQMIHELSPKILVLVEQDSSHNGPF 407
                             ***************.79*******************************88877777...8************************** PP

                    GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                             Fl rf+eal+yysa+fdsl+a lp+ +  r+k+E++++++ei+n+++ceg +r+erhe++ +Wr+r+++aGF+ +p++  +++qak 
  RcHm_v2.0_Chr7g0190881 408 FLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEEIKNIISCEGPARVERHERVDQWRRRMSRAGFQGAPIK--MMAQAKQ 492
                             ****************************************************************************96..789**** PP

                    GRAS 340 llrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              l k k  +gy+v ee+g+lvlgWk+rp+v++S+W+
  RcHm_v2.0_Chr7g0190881 493 WLGKNKvCEGYTVVEEKGCLVLGWKSRPIVAASCWK 528
                             ******9****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    
MARSRSFMTE YECTNHEIRT NRMSGLELLG LNNHSSMACY SYPYMSSLEE GSANDSSLIN  60
PYSDHESRDH KKLKRTLSIA DSVSSNSSIN SSIISRSSST NSLTTLPRLH FRDHIWTYTQ  120
RYLAAEAVEE AAVAMINAEE NGAEQEDGTA DGMRLVQLLI ACAEAVACRD KSHASALLSE  180
LRANALVFGS SFQRVASCFV QGLASRLALV QPLGAVGFVP SKLNAKDYAL MDKKEEALRL  240
VYEICPHIQF GHFVANSSIL EALEGESFVH VVDLGMTLGL PHGDQWQGLI QSLATRAGQP  300
PVSRLRITGV GLCADRLLII GEELEAYADS LGINLEFSCV ESNLENLKPE DIKIFEGEVL  360
VVNSILQLHC VVKESRGALN SVLQMIHELS PKILVLVEQD SSHNGPFFLG RFMEALHYYS  420
AIFDSLDAML PKYDTRRAKM EQFYFAEEIK NIISCEGPAR VERHERVDQW RRRMSRAGFQ  480
GAPIKMMAQA KQWLGKNKVC EGYTVVEEKG CLVLGWKSRP IVAASCWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-81GRAS family protein