PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0189871

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MIKC_MADS

Protein Properties

Length: 153aa MW: 17464.3 Da PI: 10.8249

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0189871	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93	1.5e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+++ rqvtfskRr+gilKKA+ELSvLCdaeva+i+fs++gkly y+s RcHm_v2.0_Chr7g0189871 9 KRIESSISRQVTFSKRRTGILKKAFELSVLCDAEVALIVFSPSGKLYQYAS 59 79***********************************************86 PP
2	K-box	44.7	5.5e-16	59	124	34	99
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ +l G +L+ L ++eL+qLe+qL++++++iRs +++ e+i+ l+kk k++qeen+ L+k+++ RcHm_v2.0_Chr7g0189871 59 SHENLAGAELSMLGMQELKQLERQLKTGVQRIRSEMTRITSENIRMLKKKHKAQQEENRLLQKRVK 124 6889**********************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence
MGRRKVELKR IESSISRQVT FSKRRTGILK KAFELSVLCD AEVALIVFSP SGKLYQYASH 60 ENLAGAELSM LGMQELKQLE RQLKTGVQRI RSEMTRITSE NIRMLKKKHK AQQEENRLLQ 120 KRVKLHELDQ YGNASCSITL GASARNVINA FQT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	2e-33	MIKC_MADS family protein