PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0187451

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 402aa MW: 46180.3 Da PI: 6.2297

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0187451	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.2	4.6e-51	17	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWk 84 +ppGfrFhPt+eel+++yL+kkv+ ++++l +vi+evd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wk RcHm_v2.0_Chr7g0187451 17 VPPGFRFHPTEEELLHYYLRKKVAYERIDL-DVIREVDLNKLEPWDIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWK 102 69**************************.9***********964444222455************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+dk ++s + + +gl+ktLvfykgrap+g+k+dW+mheyrl RcHm_v2.0_Chr7g0187451 103 ATGRDKIIYS-GIRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 145 ******.9999*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MSAEDHMNLS INGQSQVPPG FRFHPTEEEL LHYYLRKKVA YERIDLDVIR EVDLNKLEPW 60 DIQEKCKIGS TPQNDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKII YSGIRRIGLR 120 KTLVFYKGRA PHGQKSDWIM HEYRLDESSS SVETTVSSSI GESMAEDGWV VCRVFKKKNY 180 QKALESPKAS FSMDSPNNQM LPGSRNDGVL DQILLYMGRT TCKIENHDSL HERFMHLPRL 240 ESQTSLPSLP VQFDHDRSFK ACYHDQTIDD MLIETDHHQQ QQQQQPSPTN QPNDPVDHPD 300 HDDPKTRIVN DWATLDRLVA SQLNGHEDET SKHLSCFGDP NMAFCSSPPS NDEDLQLSYP 360 YLRQGRISQN QSEVFNSEND LWSFTKSSPS PSSSDPLCHL SV

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MSAEDHMNLS INGQSQVPPG FRFHPTEEEL LHYYLRKKVA YERIDLDVIR EVDLNKLEPW  60
DIQEKCKIGS TPQNDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKII YSGIRRIGLR  120
KTLVFYKGRA PHGQKSDWIM HEYRLDESSS SVETTVSSSI GESMAEDGWV VCRVFKKKNY  180
QKALESPKAS FSMDSPNNQM LPGSRNDGVL DQILLYMGRT TCKIENHDSL HERFMHLPRL  240
ESQTSLPSLP VQFDHDRSFK ACYHDQTIDD MLIETDHHQQ QQQQQPSPTN QPNDPVDHPD  300
HDDPKTRIVN DWATLDRLVA SQLNGHEDET SKHLSCFGDP NMAFCSSPPS NDEDLQLSYP  360
YLRQGRISQN QSEVFNSEND LWSFTKSSPS PSSSDPLCHL SV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-103	NAC family protein