PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0182461
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 288aa    MW: 32791.3 Da    PI: 8.5526
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0182461genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.21.9e-151822711299
                             HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                      B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                             + +  +++ +fa+eh   + +s  +tl+ ++ ++W+ ++++  +s++     v ++GWk F ++n+L++ D++vF+l+++++f  +v
  RcHm_v2.0_Chr7g0182461 182 RCSGAYISPSFAKEHVCRPGTSCNVTLQISEEKVWTAQCTVGENSEHklyaRVSGAGWKAFKEDNHLEVHDVCVFELIEERTF--KV 266
                             4455799********777788889***************9966666655555566**********************987777..99 PP

                             EEE-S CS
                      B3  95 kvfrk 99 
                             +++r+
  RcHm_v2.0_Chr7g0182461 267 SIIRA 271
                             99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MATFPRPMAS PSFCLKIVTA NDLRDGKELP ETAVKKYGHC MAESIFLKAP NCWTWWPIKV  60
KRSVRGGRMW LHKGWQDFAN FYSLDQGYFA LFTYEGEHSH FLVRLFHWND MEIDYPIHGG  120
GVPKRKRTGA NRNTPPAYLE ARTSPTSSGS STDENQNDLS TATSFKSDKP LLMLRMTATY  180
IRCSGAYISP SFAKEHVCRP GTSCNVTLQI SEEKVWTAQC TVGENSEHKL YARVSGAGWK  240
AFKEDNHLEV HDVCVFELIE ERTFKVSIIR AKVKINKQDG ESEDKLMF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.19e-12B3 family protein