PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0181811 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 184aa MW: 20484.2 Da PI: 10.2693 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.8 | 4.6e-28 | 2 | 70 | 54 | 123 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvm 123 +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++lvg+kktLvfy+grap gek +Wv+ RcHm_v2.0_Chr7g0181811 2 GEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYK-GKSLVGMKKTLVFYRGRAPIGEKNKWVI 70 579**************************************.999***********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MGEKEWYFFC VRDRKYPTGL RTNRATEAGY WKATGKDKEI YKGKSLVGMK KTLVFYRGRA 60 PIGEKNKWVI CRVFEKSAGG KKIHITGLVN LGSHGTEMRS SGLPPLLDTA PYNGAKTRPA 120 SESNYVPCFS NHESIDSQRN QGIVDYIKGN PLFSVSSNPS NNNAFPRVTF QNSLYSAPVS 180 SGNF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 8e-66 | NAC family protein |