PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G61430.1 | ||||||||
Common Name | ANAC100, ATNAC5, MFB13.6, NAC100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 336aa MW: 38472.5 Da PI: 8.2006 | ||||||||
Description | NAC domain containing protein 100 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 183.3 | 5.9e-57 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL+kkv ++++++ ++i evd++k+ePw+Lp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++ AT5G61430.1 16 LPPGFRFHPTDEELITHYLHKKVLDTSFSA-KAIGEVDLNKSEPWELPWMAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GKS 111 79***************************9.89***************8888899***************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfy+grapkg+kt+Wvmheyrle AT5G61430.1 112 LVGMKKTLVFYRGRAPKGQKTNWVMHEYRLE 142 *****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-65 | 12 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.269 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-30 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
METFCGFQKE EEQMDLPPGF RFHPTDEELI THYLHKKVLD TSFSAKAIGE VDLNKSEPWE 60 LPWMAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYRGRAPKGQ KTNWVMHEYR LEGKFSAHNL PKTAKNEWVI CRVFQKSAGG KKIPISSLIR 180 IGSLGTDFNP SLLPSLTDSS PYNDKTKTEP VYVPCFSNQT DQNQGTTLNC FSSPVLNSIQ 240 ADIFHRIPLY QTQSLQVSMN LQSPVLTQEH SVLHAMIENN RRQSLKTMSV SQETGVSTDM 300 NTDISSDFEF GKRRFDSQED PSSSTGPVDL EPFWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.7461 | 0.0 | bud| leaf| root| silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145359529 | 0.0 | ||||
Genevisible | 247519_at | 0.0 | ||||
Expression Atlas | AT5G61430 | - | ||||
AtGenExpress | AT5G61430 | - | ||||
ATTED-II | AT5G61430 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G61430.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | Brassinosteroid |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G61430 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY054644 | 0.0 | AY054644.1 Arabidopsis thaliana NAM (no apical meristem)-like protein (MFB13.22) mRNA, complete cds. | |||
GenBank | AY081496 | 0.0 | AY081496.1 Arabidopsis thaliana NAM (no apical meristem)-like protein (MFB13.22) mRNA, complete cds. | |||
GenBank | AY085102 | 0.0 | AY085102.1 Arabidopsis thaliana clone 12970 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_200951.1 | 0.0 | NAC domain containing protein 100 | ||||
Swissprot | Q9FLJ2 | 0.0 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A178USB8 | 0.0 | A0A178USB8_ARATH; NAC100 | ||||
STRING | AT5G61430.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 | Representative plant | OGRP17 | 15 | 800 |
Link Out ? help Back to Top | |
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Phytozome | AT5G61430.1 |
Entrez Gene | 836264 |
iHOP | AT5G61430 |
wikigenes | AT5G61430 |