PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0181471
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Nin-like
Protein Properties Length: 328aa    MW: 38256 Da    PI: 6.3304
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0181471genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.96.6e-26136183552
                  RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                             +s e++s+yF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk++sl
  RcHm_v2.0_Chr7g0181471 136 LSRETISSYFYMPITQAAKELNIGLTLLKKRCRELGIRRWPHRKLTSL 183
                             7899*****************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MVQDYTFIDA LPFMESCLPS LDIQPIRHLF PGDDFSFGDN GNETENGVNS ELFASGFERP  60
NHHHQQEQEQ QQQQQQQQQQ QEKQQPNLLL PSNEDQSGAD REHVAEERKR KRRCMRIDHE  120
VKSGSSTRSY SSSRLLSRET ISSYFYMPIT QAAKELNIGL TLLKKRCREL GIRRWPHRKL  180
TSLQTLIRNI QVPKYDIFQK ENFTIGIYNF LKQVMINLGK EEEENEEKLR NAIELLEREK  240
KLMEEAPDMQ LEDNTKRLRQ ACFKANYKKR KIMGMNLIDY PPHSSNFSTI DTRGGKSVAI  300
LDNRGEEEDE EIKSLLSDSF SSSSSMMI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113RKRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.18e-38Nin-like family protein