PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0180741

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 643aa MW: 69796.8 Da PI: 7.1529

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0180741	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.5	3.7e-30	267	326	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg Hnh+ RcHm_v2.0_Chr7g0180741 267 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCADDMSILITTYEGAHNHP 326 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence
MEAAVKKSYH GDQEQEEKRV VLLESRTATA LDDDHHGEGR YSREELVIKI STTSNIKGSS 60 SVEPDHSVAS NSSSLKEQDY QLESARAEMG EVREENQRLK KYLDRMMEDY QTLQMQYHDI 120 QQKAIKSSKD DNATNNHQDD DESEQLVSLS LGSFSSKRKK VEEKNKSPST QEGKEKDTDD 180 EKSLSLGLDC KYEAPAKSSS ATTDQVPLSN PSPSSSVEEV RKEEAGETWP PKKVLKTMRS 240 IEDEVAQQNP VKKARVSVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTIAPSCP 300 VRKQVQRCAD DMSILITTYE GAHNHPLPLS ATAMASTTSA AASMLLSGSS SSSSLPGLNP 360 SAGATTAAAD LRGYNYYVSD NSRSRFYIPN SSMSSSLPTI TLDLTSNPSS SSSSQLNKFA 420 SSTLNSAHQV PYPPTSLNFG SSDQSNNTMP WTNSGFLSYG NGTQLPYNNK NPIIGRQQQQ 480 PMQNSMYQNY MQKNNPTPQQ FQLPDPIAAA TKAITADPSF QSALAAALTS IIGGSSNGGS 540 GSSNNNQNAG GDHFNNIMAQ KLKWGEHFPG ISSSNGPTAS SYLQTAIKGN NITGCASSYL 600 NKPNSSSVNI SQPGSLMFLQ PPNSLPFATH KSASTSPSED HKS

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence

MEAAVKKSYH GDQEQEEKRV VLLESRTATA LDDDHHGEGR YSREELVIKI STTSNIKGSS  60
SVEPDHSVAS NSSSLKEQDY QLESARAEMG EVREENQRLK KYLDRMMEDY QTLQMQYHDI  120
QQKAIKSSKD DNATNNHQDD DESEQLVSLS LGSFSSKRKK VEEKNKSPST QEGKEKDTDD  180
EKSLSLGLDC KYEAPAKSSS ATTDQVPLSN PSPSSSVEEV RKEEAGETWP PKKVLKTMRS  240
IEDEVAQQNP VKKARVSVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTIAPSCP  300
VRKQVQRCAD DMSILITTYE GAHNHPLPLS ATAMASTTSA AASMLLSGSS SSSSLPGLNP  360
SAGATTAAAD LRGYNYYVSD NSRSRFYIPN SSMSSSLPTI TLDLTSNPSS SSSSQLNKFA  420
SSTLNSAHQV PYPPTSLNFG SSDQSNNTMP WTNSGFLSYG NGTQLPYNNK NPIIGRQQQQ  480
PMQNSMYQNY MQKNNPTPQQ FQLPDPIAAA TKAITADPSF QSALAAALTS IIGGSSNGGS  540
GSSNNNQNAG GDHFNNIMAQ KLKWGEHFPG ISSSNGPTAS SYLQTAIKGN NITGCASSYL  600
NKPNSSSVNI SQPGSLMFLQ PPNSLPFATH KSASTSPSED HKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	4e-69	WRKY family protein