PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G18860.1
Common NameATWRKY61, F6A14.5, WRKY61
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 480aa    MW: 52914.3 Da    PI: 6.9576
Description WRKY DNA-binding protein 61
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G18860.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.3e-30190249159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+Hnh+
  AT1G18860.1 190 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIAaSCPVRKQVQRCSEDMSILISTYEGTHNHP 249
                  58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-31175251IPR003657WRKY domain
SuperFamilySSF1182901.06E-26183251IPR003657WRKY domain
PROSITE profilePS5081128.529185251IPR003657WRKY domain
SMARTSM007741.1E-34190250IPR003657WRKY domain
PfamPF031065.4E-26191249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0009047anatomystem
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MDEAKEENRR LKSSLSKIKK DFDILQTQYN QLMAKHNEPT KFQSKGHHQD KGEDEDREKV  60
NEREELVSLS LGRRLNSEVP SGSNKEEKNK DVEEAEGDRN YDDNEKSSIQ GLSMGIEYKA  120
LSNPNEKLEI DHNQETMSLE ISNNNKIRSQ NSFGFKNDGD DHEDEDEILP QNLVKKTRVS  180
VRSRCETPTM NDGCQWRKYG QKIAKGNPCP RAYYRCTIAA SCPVRKQVQR CSEDMSILIS  240
TYEGTHNHPL PMSATAMASA TSAAASMLLS GASSSSSAAA DLHGLNFSLS GNNITPKPKT  300
HFLQSPSSSG HPTVTLDLTT SSSSQQPFLS MLNRFSSPPS NVSRSNSYPS TNLNFSNNTN  360
TLMNWGGGGN PSDQYRAAYG NINTHQQSPY HKIIQTRTAG SSFDPFGRSS SSHSPQINLD  420
HIGIKNIISH QVPSLPAETI KAITTDPSFQ SALATALSSI MGGDLKIDHN VTRNEAEKSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19177251174WRKY transcription factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1864786270.0
Genevisible261429_at0.0
Expression AtlasAT1G18860-
AtGenExpressAT1G18860-
ATTED-IIAT1G18860-
Functional Description ? help Back to Top
Source Description
TAIRmember of WRKY Transcription Factor; Group II-b
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G18860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G18860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4521750.0AF452175.1 Arabidopsis thaliana WRKY transcription factor 61 (WRKY61) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001319038.10.0WRKY DNA-binding protein 61
SwissprotQ8VWV60.0WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBLA0A2H1ZEC20.0A0A2H1ZEC2_ARATH; WRKY DNA-binding protein 61
STRINGAT1G18860.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126631729
Representative plantOGRP1417875
Publications ? help Back to Top
  1. Eulgem T,Rushton PJ,Robatzek S,Somssich IE
    The WRKY superfamily of plant transcription factors.
    Trends Plant Sci., 2000. 5(5): p. 199-206
    [PMID:10785665]
  2. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  3. Causier B,Ashworth M,Guo W,Davies B
    The TOPLESS interactome: a framework for gene repression in Arabidopsis.
    Plant Physiol., 2012. 158(1): p. 423-38
    [PMID:22065421]
  4. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]
  5. Gao R,Liu P,Yong Y,Wong SM
    Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana.
    Sci Rep, 2016. 6: p. 24604
    [PMID:27086702]