PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0311741 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 26300.5 Da PI: 8.4733 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 1e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ l d+vk++G g W + +r+ g++R++k+c++rw++yl RcHm_v2.0_Chr6g0311741 15 KGAWTAHEDQVLRDYVKEYGEGKWGKMSRETGLKRCGKSCRLRWLNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.7e-17 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ RcHm_v2.0_Chr6g0311741 68 RGNITEDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNS 111 7999******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MGRSSSRCDK EGANKGAWTA HEDQVLRDYV KEYGEGKWGK MSRETGLKRC GKSCRLRWLN 60 YLRPDIKRGN ITEDEEELII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN STIRKKQENS 120 SRRSRNERKT IKDPYLTNNE IRPTSSTRNE LAEQPFLSGV ERNIKAEPDS GDGFLQTTGE 180 SGMAWNFIMD LNAGQLSISE FLHTDFSKLC ELNTMVADCT NGADIGHLEL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 7e-56 | MYB family protein |