PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0308731

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 306aa MW: 33197.2 Da PI: 9.7296

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0308731	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.9	1.1e-18	16	61	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + RcHm_v2.0_Chr6g0308731 16 KGPWSPEEDEALQRLVQSYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61 79****************************.*********985 PP
2	Myb_DNA-binding	54.8	2.2e-17	70	112	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tI+r ++ gRt++ +k++w++ RcHm_v2.0_Chr6g0308731 70 PFTPEEDDTIIRAHARFGNK-WATISRLLN-GRTDNAIKNHWNST 112 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MASSSSTKKA AADRIKGPWS PEEDEALQRL VQSYGPRNWS LISKSIPGRS GKSCRLRWCN 60 QLSPEVEHRP FTPEEDDTII RAHARFGNKW ATISRLLNGR TDNAIKNHWN STLKRKFSSF 120 SDDMSPEQPL KRSASVGAGT TVSGLYMNPG SPSGSDLSDS SLPGVIPPSQ AVRPVAPVAD 180 PPTSLSLSLP GSNEGPNHQR SASGSGSSWV VSPKPKAQIV QLQPQVIQAQ PEEAGGGEAA 240 RQGNHNSEAG IDKQFFSAEF LDVMQEMIRK EVRNYMSGVD HNGMFMHTEA AIRNAVVKRI 300 GISKVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-74	MYB family protein