PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0302041
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family SRS
Protein Properties Length: 341aa    MW: 36778.1 Da    PI: 7.3653
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0302041genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702226.93.8e-701142643153
                  DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskk..qsals 87 
                             sg+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerq+q +a++++++++++ + +kr+r++++     s+l+
  RcHm_v2.0_Chr6g0302041 114 SGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQEQFSALQQQQQQQQQLQFPKRQRDNQAGGagGSSLA 200
                             7899*************************************************************9999999999966550156666 PP

                  DUF702  88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                             + ++++++  + le + +P+evss+a+frcvrvs++dd ee++aYqtav+igGhvfkG+LydqGl+
  RcHm_v2.0_Chr6g0302041 201 CVRIPTNT--SGLELAPFPAEVSSPALFRCVRVSAMDDVEEQYAYQTAVNIGGHVFKGLLYDQGLD 264
                             67766665..5689999***********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MAGFFGNLGG RDQGPRNKQD GDDERGGNLN LFSYGNEEIY NNKGGFELWP QYHPHHPHHH  60
QQSLNYYAFG VDPSRNNNHN NLEGNVSDDS SSGLRLTVMR QGSGGGGGGS GLGSGGMNCQ  120
DCGNQAKKDC PHLRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQEQFSAL QQQQQQQQQL  180
QFPKRQRDNQ AGGAGGSSLA CVRIPTNTSG LELAPFPAEV SSPALFRCVR VSAMDDVEEQ  240
YAYQTAVNIG GHVFKGLLYD QGLDGHYTSA TTAGDSSSGQ QDGGGGGGHH HNNQQQLNLI  300
NTTTSTSANP PTATLLDPTV VFPTPLNAFV AGTQYFPPPR S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.14e-74SRS family protein