PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0301871 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 147aa MW: 16407.8 Da PI: 8.5017 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.6 | 8.3e-17 | 47 | 131 | 4 | 96 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 ++ps+v + +l lp++f++ + +++++s +ltlede+g++++v + ++ry l++GW +F+++++L +gD vv++ + ++ RcHm_v2.0_Chr6g0301871 47 SMVPSHVYRVFWLNLPRRFCDGN-LPETKS-KLTLEDEEGNEFTVVF----IPERYGLSGGWVSFAREKKLHDGDAVVLE---QiEK 124 689*****************777.555555.9***************....566788***********************...4467 PP E..EEEE CS B3 90 felvvkv 96 ++l+v++ RcHm_v2.0_Chr6g0301871 125 TRLKVSL 131 7778776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence |
MSGRKRGNAI VREEPRDASI EARSIAREAA RAHQMSLASG TPSVVISMVP SHVYRVFWLN 60 LPRRFCDGNL PETKSKLTLE DEEGNEFTVV FIPERYGLSG GWVSFAREKK LHDGDAVVLE 120 QIEKTRLKVS LLALNTNIID LTMALPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 1e-24 | B3 family protein |